imputationbot
This tool allows to automate interactions with Michigan Imputation Servers.
Software
haplocheck
Haplocheck detects in-sample contamination in mtDNA or WGS sequencing studies by analyzing the mitchondrial content.
pgs-calc
Applying polygenic scores (PGS) on imputed genotypes. - genome-informatics
nf-gwas
A nextflow pipeline to perform genome-wide association studies (GWAS).
haplogrep
Haplogrep is a fast and free haplogroup classification tool.
Michigan Imputation Server
Free Next-Generation Genotype Imputation Service
mutserve
A variant caller for the mitochondrial genome to detect homoplasmic and heteroplasmic sites in sequence data.