Haplogroup classification of mtDNA
Haplogrep is a fast and free haplogroup classification tool. Upload your mtDNA profiles aligned to rCRS or RSRS and receive mitochondrial haplogroups in return. You can run Haplogrep graphically or download the latest version from GitHub.
Team
Professor of Digital and Computational Genomics
+43 512 9003 70579
sebastian.schoenherr@i-med.ac.at
Assistant Professor of Genome Informatics
+43 512 9003 70562
lukas.forer@i-med.ac.at
Availability
Haplogrep is available as a graphical web-service or on GitHub for local usage.
Publications
Weissensteiner H, Pacher D, Kloss-Brandstätter A, Forer L, Specht G, Bandelt HJ, Kronenberg F, Salas A, Schönherr S: HaploGrep 2: mitochondrial haplogroup classification in the era of high-throughput sequencing. Nucleic Acids Res. 44:W58-63, 2016. PMID: 27084951 Journal Article
Kloss-Brandstätter A, Pacher D, Schönherr S, Weissensteiner H, Binna R, Specht G, Kronenberg F: HaploGrep: a fast and reliable algorithm for automatic classification of mitochondrial DNA haplogroups. Hum. Mutat. 32:25-32, 2011. PMID: 20960467 Journal Article